STRINGSTRING
Bra007321 protein (Brassica rapa) - STRING interaction network
"Bra007321" - AT2G41620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007321AT2G41620 (E=0.0) | nucleoporin interacting component family protein (862 aa)    
Predicted Functional Partners:
Bra012053
AT5G51200 (E=0.0) | unknown protein (1884 aa)
     
  0.990
Bra027371
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1072 aa)
     
  0.979
Bra021532
AT3G14120 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (1069 aa)
     
  0.979
Bra013073
AT3G14120 (E=6e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 207 Blast hits to 206 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (473 aa)
     
  0.979
Bra010959
AT1G24310 (E=2e-156) | unknown protein (399 aa)
     
  0.978
Bra036599
AT5G26920 (E=4e-144) CBP60G | CBP60G (CAM-BINDING PROTEIN 60-LIKE.G); calmodulin binding (589 aa)
     
  0.978
Bra035162
AT1G80670 (E=4e-193) | transducin family protein / WD-40 repeat family protein (348 aa)
     
  0.978
Bra009083
AT5G26120 (E=5e-080) ATASD2, ASD2 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (788 aa)
     
  0.978
Bra008447
AT1G80670 (E=2e-197) | transducin family protein / WD-40 repeat family protein (346 aa)
     
  0.978
Bra003577
AT1G80670 (E=5e-152) | transducin family protein / WD-40 repeat family protein (276 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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