STRINGSTRING
Bra007322 protein (Brassica rapa) - STRING interaction network
"Bra007322" - AT3G57360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007322AT3G57360 (E=2e-113) | unknown protein (254 aa)    
Predicted Functional Partners:
Bra006672
AT5G60230 (E=1e-123) SEN2, ATSEN2 | SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease (249 aa)
       
  0.948
Bra002503
AT5G60210 (E=4e-192) | LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT2G37080.1); Has 77946 Blast hits to 39215 proteins in 1793 species- Archae - 845; Bacteria - 8877; Metazoa - 39997; Fungi - 6049; Plants - 2988; Viruses - 248; Other Eukaryotes - 18942 (source- NCBI BLink). (878 aa)
       
  0.948
Bra030327
AT5G40820 (E=0.0) ATRAD3, ATR, ATATR | ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (3589 aa)
       
      0.612
Bra013827
AT4G24710 (E=2e-229) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (490 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]