STRINGSTRING
Bra007323 protein (Brassica rapa) - STRING interaction network
"Bra007323" - AT3G57380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007323AT3G57380 (E=6e-181) | transferase, transferring glycosyl groups (504 aa)    
Predicted Functional Partners:
Bra005685
AT5G01450 (E=2e-213) | protein binding / zinc ion binding (444 aa)
           
  0.476
Bra011622
AT4G35540 (E=2e-138) | transcription regulator/ zinc ion binding (467 aa)
           
  0.475
Bra036214
AT3G29380 (E=7e-111) | transcription factor IIB (TFIIB) family protein (327 aa)
           
  0.473
Bra033101
AT3G29380 (E=3e-092) | transcription factor IIB (TFIIB) family protein (329 aa)
           
  0.473
Bra025398
AT3G29380 (E=8e-109) | transcription factor IIB (TFIIB) family protein (336 aa)
           
  0.473
Bra017978
AT3G29380 (E=4e-109) | transcription factor IIB (TFIIB) family protein (337 aa)
           
  0.473
Bra001354
AT3G10330 (E=1e-169) | transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (312 aa)
           
  0.471
Bra000043
AT2G38185 (E=6e-100) | zinc finger (C3HC4-type RING finger) family protein (457 aa)
           
  0.418
Bra016292
AT1G26840 (E=2e-138) ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding (284 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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