STRINGSTRING
Bra007325 protein (Brassica rapa) - STRING interaction network
"Bra007325" - AT5G52500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007325AT5G52500 (E=5e-109) | unknown protein (447 aa)    
Predicted Functional Partners:
Bra038583
AT1G61730 (E=4e-023) | DNA-binding storekeeper protein-related (419 aa)
           
  0.483
Bra034488
AT1G61730 (E=3e-057) | DNA-binding storekeeper protein-related (322 aa)
           
  0.483
Bra032717
AT1G44810 (E=8e-037) | transcription regulator (332 aa)
           
  0.483
Bra031402
AT4G00390 (E=4e-054) | transcription regulator (332 aa)
           
  0.483
Bra030351
AT3G29635 (E=7e-139) | transferase family protein (455 aa)
           
  0.483
Bra027078
AT1G61730 (E=5e-068) | DNA-binding storekeeper protein-related (380 aa)
           
  0.483
Bra025445
AT1G11510 (E=4e-052) | DNA-binding storekeeper protein-related (307 aa)
           
  0.483
Bra021317
AT4G00390 (E=1e-052) | transcription regulator (308 aa)
           
  0.483
Bra019847
AT1G11510 (E=4e-031) | DNA-binding storekeeper protein-related (356 aa)
           
  0.483
Bra019183
AT4G25210 (E=3e-074) | transcription regulator (366 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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