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Bra007330 protein (Brassica rapa) - STRING interaction network
"Bra007330" - AT3G57480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007330AT3G57480 (E=3e-080) | zinc finger (C2H2 type, AN1-like) family protein (204 aa)    
Predicted Functional Partners:
Bra008506
AT1G64790 (E=0.0) | binding (2613 aa)
       
      0.619
Bra040885
AT4G11740 (E=6e-191) SAY1 | SAY1 (555 aa)
       
      0.618
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
       
      0.618
Bra035277
AT4G10790 (E=5e-123) | UBX domain-containing protein (455 aa)
       
      0.618
Bra033134
AT4G11740 (E=4e-119) SAY1 | SAY1 (475 aa)
       
      0.618
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
       
      0.618
Bra000958
AT4G00752 (E=5e-174) | UBX domain-containing protein (458 aa)
       
      0.618
Bra000721
AT4G10790 (E=7e-155) | UBX domain-containing protein (479 aa)
       
      0.618
Bra022899
AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1004 aa)
       
 
  0.616
Bra021810
AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1004 aa)
       
 
  0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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