STRINGSTRING
Bra007345 protein (Brassica rapa) - STRING interaction network
"Bra007345" - AT3G57660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007345AT3G57660 (E=0.0) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1640 aa)    
Predicted Functional Partners:
Bra030183
AT1G29940 (E=0.0) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1152 aa)
   
  0.999
Bra030180
AT1G29940 (E=7e-086) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (191 aa)
   
  0.999
Bra025090
AT5G45140 (E=0.0) NRPC2 | NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1158 aa)
 
  0.999
Bra020911
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1195 aa)
 
  0.999
Bra038761
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1126 aa)
 
  0.999
Bra013550
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1189 aa)
 
  0.999
Bra020873
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1304 aa)
 
  0.999
Bra022279
AT3G23780 (E=0.0) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1169 aa)
   
  0.998
Bra021293
AT3G23780 (E=9e-028) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase (133 aa)
   
  0.998
Bra012547
AT2G24650 (E=3e-043) | DNA binding / transcription factor (328 aa)
   
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]