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Bra007360 protein (Brassica rapa) - STRING interaction network
"Bra007360" - AT3G57810 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra007360AT3G57810 (E=6e-025) | OTU-like cysteine protease family protein (246 aa)    
Predicted Functional Partners:
Bra037992
AT1G55320 (E=0.0) AAE18 | AAE18 (ACYL-ACTIVATING ENZYME 18); catalytic/ ligase (721 aa)
       
      0.879
Bra030286
AT5G36880 (E=0.0) | acetyl-CoA synthetase, putative / acetate-CoA ligase, putative (746 aa)
       
      0.879
Bra013012
AT5G23050 (E=3e-276) AAE17 | AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase (764 aa)
       
      0.879
Bra011912
AT1G55325 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- TRAP240 (InterPro-IPR009401); Has 190 Blast hits to 182 proteins in 65 species- Archae - 0; Bacteria - 45; Metazoa - 113; Fungi - 3; Plants - 23; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink). (1888 aa)
       
      0.879
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.742
Bra013827
AT4G24710 (E=2e-229) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (490 aa)
     
    0.739
Bra022833
AT3G01610 (E=2e-229) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (743 aa)
     
    0.733
Bra013082
AT3G01610 (E=6e-015) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (260 aa)
     
    0.733
Bra007262
AT3G56690 (E=5e-276) CIP111 | CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding (980 aa)
     
    0.733
Bra000999
AT3G01610 (E=5e-306) CDC48C, emb1354 | CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (833 aa)
     
    0.733
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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