STRINGSTRING
Bra007367 protein (Brassica rapa) - STRING interaction network
"Bra007367" - AT3G57940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007367AT3G57940 (E=0.0) | unknown protein (1021 aa)    
Predicted Functional Partners:
Bra031535
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1667 aa)
     
 
  0.997
Bra015522
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1160 aa)
     
 
  0.997
Bra022973
AT2G34357 (E=0.0) | binding (1278 aa)
     
      0.997
Bra013707
AT4G23540 (E=0.0) | binding (1102 aa)
     
      0.997
Bra005434
AT2G34357 (E=0.0) | binding (1266 aa)
     
      0.997
Bra038327
AT1G69070 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPro-IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species- Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source- NCBI BLink). (904 aa)
     
 
  0.997
Bra034124
AT3G10530 (E=1e-252) | transducin family protein / WD-40 repeat family protein (536 aa)
     
 
  0.997
Bra029849
AT3G10530 (E=2e-169) | transducin family protein / WD-40 repeat family protein (503 aa)
     
 
  0.997
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
 
  0.997
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
 
  0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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