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Bra007389 protein (Brassica rapa) - STRING interaction network
"Bra007389" - AT3G58210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007389AT3G58210 (E=3e-060) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein (319 aa)    
Predicted Functional Partners:
Bra025031
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (760 aa)
     
  0.887
Bra022023
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (785 aa)
     
  0.887
Bra017569
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (786 aa)
     
  0.887
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.770
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
       
  0.770
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
  0.727
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
     
  0.654
Bra034597
AT4G02570 (E=7e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (731 aa)
     
  0.654
Bra033363
AT4G02570 (E=7e-264) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (778 aa)
     
  0.654
Bra033362
AT4G02570 (E=1e-256) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (716 aa)
     
  0.654
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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