STRINGSTRING
Bra007394 protein (Brassica rapa) - STRING interaction network
"Bra007394" - AT3G58460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007394AT3G58460 (E=3e-203) ATRBL15 | ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) (417 aa)    
Predicted Functional Partners:
Bra030331
AT5G40670 (E=3e-132) | PQ-loop repeat family protein / transmembrane family protein (267 aa)
       
      0.620
Bra025554
AT5G40670 (E=9e-137) | PQ-loop repeat family protein / transmembrane family protein (270 aa)
       
      0.620
Bra020329
AT5G59040 (E=6e-054) COPT3 | COPT3; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (153 aa)
       
      0.542
Bra020328
AT5G59030 (E=2e-061) COPT1 | COPT1 (copper transporter 1); copper ion transmembrane transporter (164 aa)
       
      0.542
Bra020119
AT5G20650 (E=7e-062) COPT5 | COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (143 aa)
       
      0.542
Bra006725
AT5G59040 (E=5e-053) COPT3 | COPT3; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (150 aa)
       
      0.542
Bra006724
AT5G59030 (E=8e-049) COPT1 | COPT1 (copper transporter 1); copper ion transmembrane transporter (161 aa)
       
      0.542
Bra006569
AT5G20650 (E=1e-021) COPT5 | COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (151 aa)
       
      0.542
Bra005150
AT2G37925 (E=6e-051) COPT4 | COPT4; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (149 aa)
       
      0.542
Bra002582
AT5G59030 (E=8e-060) COPT1 | COPT1 (copper transporter 1); copper ion transmembrane transporter (163 aa)
       
      0.542
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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