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Bra007404 protein (Brassica rapa) - STRING interaction network
"Bra007404" - AT3G58610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007404AT3G58610 (E=5e-289) | ketol-acid reductoisomerase (586 aa)    
Predicted Functional Partners:
Bra028367
AT3G23940 (E=0.0) | dehydratase family (609 aa)
 
  0.997
Bra015023
AT3G23940 (E=1e-314) | dehydratase family (611 aa)
 
  0.997
BrALS3
AT3G48560 (E=0.0) CSR1, ALS, AHAS, TZP5, IMR1 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase (652 aa)
 
 
  0.979
Bra023559
AT5G16290 (E=2e-238) | acetolactate synthase small subunit, putative (475 aa)
   
  0.977
Bra021745
AT2G31810 (E=3e-227) | acetolactate synthase small subunit, putative (488 aa)
   
  0.977
Bra025195
AT3G48560 (E=1e-125) CSR1, ALS, AHAS, TZP5, IMR1 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase (593 aa)
 
 
  0.901
Bra022867
AT2G31810 (E=2e-131) | acetolactate synthase small subunit, putative (467 aa)
   
  0.896
Bra021747
AT2G31810 (E=5e-042) | acetolactate synthase small subunit, putative (145 aa)
   
  0.896
Bra005640
AT2G31810 (E=7e-138) | acetolactate synthase small subunit, putative (444 aa)
   
  0.896
Bra013983
AT5G17380 (E=3e-297) | pyruvate decarboxylase family protein (574 aa)
   
 
  0.860
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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