STRINGSTRING
Bra007409 protein (Brassica rapa) - STRING interaction network
"Bra007409" - AT2G42650 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007409AT2G42650 (E=9e-106) | 60S ribosomal protein-related (360 aa)    
Predicted Functional Partners:
Bra017144
AT2G37990 (E=8e-130) | ribosome biogenesis regulatory protein (RRS1) family protein (318 aa)
     
      0.996
Bra000034
AT2G37990 (E=4e-118) | ribosome biogenesis regulatory protein (RRS1) family protein (319 aa)
     
      0.996
Bra037103
AT3G13230 (E=3e-078) | RNA binding (233 aa)
     
      0.994
Bra034696
AT3G13230 (E=1e-109) | RNA binding (281 aa)
     
      0.994
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.993
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
 
  0.993
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
 
  0.993
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.992
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.992
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
 
  0.992
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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