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Bra007423 protein (Brassica rapa) - STRING interaction network
"Bra007423" - AT3G58970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007423AT3G58970 (E=2e-152) | magnesium transporter CorA-like family protein (429 aa)    
Predicted Functional Partners:
Bra030669
AT1G07050 (E=2e-063) | CONSTANS-like protein-related (383 aa)
       
 
  0.483
Bra004443
AT2G47600 (E=5e-284) ATMHX, MHX1, ATMHX1 | ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER); calcium-sodium antiporter/ cation-cation antiporter (537 aa)
           
  0.475
Bra036131
AT5G28640 (E=2e-050) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (203 aa)
           
  0.470
Bra020616
AT5G28640 (E=8e-038) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (204 aa)
           
  0.470
Bra010002
AT5G28640 (E=7e-050) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (203 aa)
           
  0.470
Bra021617
AT2G30160 (E=8e-157) | mitochondrial substrate carrier family protein (326 aa)
       
 
  0.455
Bra018332
AT2G30160 (E=3e-143) | mitochondrial substrate carrier family protein (333 aa)
       
 
  0.455
Bra015545
AT1G07030 (E=1e-159) | mitochondrial substrate carrier family protein (328 aa)
       
 
  0.455
Bra040032
AT3G07820 (E=4e-216) | polygalacturonase 3 (PGA3) / pectinase (396 aa)
           
  0.406
Bra023989
AT4G31710 (E=5e-260) ATGLR2.4, GLR2.4 | ATGLR2.4; intracellular ligand-gated ion channel (985 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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