STRINGSTRING
Bra007427.1-P protein (Brassica rapa) - STRING interaction network
"Bra007427.1-P" - AT3G18410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007427.1-PAT3G18410 (E=6e-060) | NADH-ubiquinone oxidoreductase-related (106 aa)    
Predicted Functional Partners:
Bra040638
AT3G05020 (E=4e-053) ACP1, ACP | ACP1 (acyl carrier protein 1); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (134 aa)
     
  0.998
Bra039471
AT3G05020 (E=9e-042) ACP1, ACP | ACP1 (acyl carrier protein 1); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (134 aa)
     
  0.998
Bra036109
AT5G27200 (E=1e-055) ACP5 | ACP5 (acyl carrier protein 5); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (141 aa)
     
  0.998
Bra035355
AT1G65290 (E=3e-049) mtACP2 | mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
     
  0.998
Bra027965
AT1G54630 (E=4e-042) ACP3 | ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
     
  0.998
Bra022484
AT1G65290 (E=7e-054) mtACP2 | mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
     
  0.998
Bra022146
AT5G47630 (E=1e-035) mtACP3 | mtACP3 (mitochondrial acyl carrier protein 3); acyl carrier/ cofactor binding ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (127 aa)
     
  0.998
Bra019193
AT4G25050 (E=4e-053) ACP4 | ACP4 (acyl carrier protein 4); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (136 aa)
     
  0.998
Bra013859
AT4G25050 (E=4e-044) ACP4 | ACP4 (acyl carrier protein 4); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (127 aa)
     
  0.998
Bra010475
AT4G25050 (E=6e-055) ACP4 | ACP4 (acyl carrier protein 4); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (158 aa)
     
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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