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Bra007429 protein (Brassica rapa) - STRING interaction network
"Bra007429" - AT2G43370 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007429AT2G43370 (E=3e-017) | U1 small nuclear ribonucleoprotein 70 kDa, putative (79 aa)    
Predicted Functional Partners:
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
  0.996
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.992
Bra018324
AT2G30260 (E=1e-094) U2B’’ | U2B’’ (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (228 aa)
     
  0.978
Bra004445
AT2G47580 (E=3e-087) U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding (258 aa)
     
  0.978
Bra041007
AT1G44910 (E=6e-210) | protein binding (1047 aa)
     
  0.978
Bra022445
AT3G19670 (E=0.0) | protein binding (1119 aa)
     
  0.978
Bra036592
AT5G26749 (E=5e-041) | nucleic acid binding / zinc ion binding (121 aa)
     
  0.978
Bra034187
AT4G03120 (E=1e-028) | proline-rich family protein ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (187 aa)
     
  0.978
Bra025830
AT1G20580 (E=7e-056) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (130 aa)
     
  0.977
Bra016461
AT1G20580 (E=1e-037) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (97 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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