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Bra007430 protein (Brassica rapa) - STRING interaction network
"Bra007430" - AT3G59060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007430AT3G59060 (E=1e-141) PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (426 aa)    
Predicted Functional Partners:
Bra022192
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (1192 aa)
       
 
  0.943
Bra037742
AT2G43010 (E=2e-140) PIF4, SRL2 | PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (406 aa)
     
0.917
Bra031991
AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (505 aa)
       
  0.911
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
  0.911
Bra020017
AT1G09530 (E=1e-195) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (494 aa)
       
0.809
Bra034284
AT2G25930 (E=3e-105) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (602 aa)
       
 
  0.790
Bra020013
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (1210 aa)
       
 
  0.789
Bra031274
AT3G21320 (E=1e-210) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR-AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (536 aa)
       
 
  0.739
Bra007774
AT2G25930 (E=2e-085) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (592 aa)
       
 
  0.739
Bra031668
AT1G09530 (E=3e-124) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (492 aa)
       
0.721
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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