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Bra007432 protein (Brassica rapa) - STRING interaction network
"Bra007432" - AT3G59090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007432AT3G59090 (E=6e-131) | EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR-AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (349 aa)    
Predicted Functional Partners:
Bra007761
AT2G26300 (E=2e-198) GPA1, GP ALPHA 1, ATGPA1 | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducer (380 aa)
       
      0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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