STRINGSTRING
Bra007446 protein (Brassica rapa) - STRING interaction network
"Bra007446" - AT3G59400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007446AT3G59400 (E=3e-085) GUN4 | GUN4; enzyme binding / tetrapyrrole binding (256 aa)    
Predicted Functional Partners:
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
   
   
  0.762
Bra006208
AT5G13630 (E=0.0) GUN5, CCH, CHLH, CCH1 | GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase (1382 aa)
   
   
  0.751
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
   
   
  0.712
Bra018619
AT1G08520 (E=0.0) PDE166, CHLD | CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (756 aa)
     
   
  0.686
Bra035447
AT1G58290 (E=1e-242) HEMA1 | HEMA1; glutamyl-tRNA reductase (528 aa)
     
   
  0.663
Bra027877
AT1G58290 (E=2e-250) HEMA1 | HEMA1; glutamyl-tRNA reductase (532 aa)
     
   
  0.663
Bra007284
AT3G56940 (E=4e-212) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (837 aa)
     
   
  0.644
Bra003256
AT3G56940 (E=3e-217) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (409 aa)
     
   
  0.644
Bra026349
AT4G27440 (E=5e-187) PORB | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase (388 aa)
   
   
  0.636
Bra024187
AT4G28640 (E=2e-087) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (398 aa)
 
        0.636
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]