STRINGSTRING
Bra007455 protein (Brassica rapa) - STRING interaction network
"Bra007455" - AT3G59500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007455AT3G59500 (E=1e-032) | integral membrane HRF1 family protein (186 aa)    
Predicted Functional Partners:
Bra017249
AT3G52760 (E=4e-015) | integral membrane Yip1 family protein (108 aa)
     
 
  0.817
Bra005285
AT2G36300 (E=2e-089) | integral membrane Yip1 family protein (256 aa)
     
 
  0.817
Bra024090
AT2G18840 (E=4e-041) | integral membrane Yip1 family protein (183 aa)
     
 
  0.804
Bra011178
AT4G30260 (E=2e-060) | integral membrane Yip1 family protein (261 aa)
     
 
  0.804
Bra010293
AT4G30260 (E=2e-111) | integral membrane Yip1 family protein (281 aa)
     
 
  0.804
Bra031788
AT1G11890 (E=4e-121) SEC22, ATSEC22 | SEC22; transporter (479 aa)
     
   
  0.472
Bra040162
AT4G17530 (E=2e-108) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (274 aa)
     
 
  0.463
Bra038676
AT3G11730 (E=7e-109) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
     
 
  0.463
Bra034106
AT4G17530 (E=2e-017) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (147 aa)
     
 
  0.463
Bra032668
AT1G02140 (E=4e-066) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding (266 aa)
     
 
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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