STRINGSTRING
Bra007463 protein (Brassica rapa) - STRING interaction network
"Bra007463" - AT3G59600 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007463AT3G59600 (E=7e-078) NRPB8B, NRPD8B, NRPE8B | NRPB8B; DNA-directed RNA polymerase (146 aa)    
Predicted Functional Partners:
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
     
  0.998
Bra039985
AT2G29540 (E=2e-025) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (96 aa)
     
  0.996
Bra018380
AT2G29540 (E=3e-043) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (129 aa)
     
  0.996
Bra025090
AT5G45140 (E=0.0) NRPC2 | NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1158 aa)
     
  0.995
Bra039057
AT5G51940 (E=1e-057) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.992
Bra025617
AT5G51940 (E=2e-065) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.992
Bra025789
AT3G25940 (E=3e-057) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
     
  0.992
Bra012206
AT3G25940 (E=3e-061) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
     
  0.992
Bra040570
AT4G16265 (E=8e-066) NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
  0.991
Bra033550
AT4G16265 (E=9e-067) NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
  0.991
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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