STRINGSTRING
Bra007465 protein (Brassica rapa) - STRING interaction network
"Bra007465" - AT2G43630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra007465AT2G43630 (E=4e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT3G59640.2); Has 48 Blast hits to 48 proteins in 14 species- Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 0; Plants - 32; Viruses - 2; Other Eukaryotes - 2 (source- NCBI BLink). (261 aa)    
Predicted Functional Partners:
Bra013218
AT3G25480 (E=2e-105) | rhodanese-like domain-containing protein (268 aa)
     
   
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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