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Bra007466 protein (Brassica rapa) - STRING interaction network
"Bra007466" - AT3G59650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007466AT3G59650 (E=9e-064) | mitochondrial ribosomal protein L51/S25/CI-B8 family protein (119 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
    0.976
Bra041038
ATCG00160 (E=5e-090) RPS2 | Chloroplast ribosomal protein S2 (206 aa)
     
  0.976
Bra031984
AT3G03600 (E=1e-111) RPS2 | RPS2 (RIBOSOMAL PROTEIN S2); structural constituent of ribosome (207 aa)
     
  0.976
Bra022625
AT5G53070 (E=3e-105) | ribosomal protein L9 family protein (254 aa)
     
  0.972
Bra003084
AT5G53070 (E=6e-103) | ribosomal protein L9 family protein (220 aa)
     
  0.972
Bra037609
AT3G44890 (E=1e-074) RPL9 | RPL9 (RIBOSOMAL PROTEIN L9); structural constituent of ribosome (196 aa)
     
  0.967
Bra031557
AT1G07210 (E=5e-071) | 30S ribosomal protein S18 family (237 aa)
     
    0.965
Bra015562
AT1G07210 (E=8e-078) | 30S ribosomal protein S18 family (279 aa)
     
    0.965
Bra016064
ATCG00790 (E=6e-054) RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit (326 aa)
     
    0.962
Bra031595
AT1G07830 (E=1e-061) | ribosomal protein L29 family protein (146 aa)
     
    0.961
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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