STRINGSTRING
Bra007479 protein (Brassica rapa) - STRING interaction network
"Bra007479" - AT3G59820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007479AT3G59820 (E=0.0) | calcium-binding mitochondrial protein-related (738 aa)    
Predicted Functional Partners:
Bra037777
AT5G64400 (E=5e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G09570.1); Has 218 Blast hits to 216 proteins in 80 species- Archae - 0; Bacteria - 10; Metazoa - 66; Fungi - 60; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (144 aa)
           
  0.456
Bra036102
AT5G27290 (E=5e-167) | unknown protein (341 aa)
           
  0.456
Bra033866
AT1G31920 (E=1e-263) | pentatricopeptide (PPR) repeat-containing protein (525 aa)
           
  0.456
Bra024293
AT5G64400 (E=5e-034) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G09570.1); Has 218 Blast hits to 216 proteins in 80 species- Archae - 0; Bacteria - 10; Metazoa - 66; Fungi - 60; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (146 aa)
           
  0.456
Bra013772
AT4G24175 (E=3e-086) | unknown protein (307 aa)
           
  0.456
Bra036845
AT3G50950 (E=0.0) | disease resistance protein (CC-NBS-LRR class), putative (1291 aa)
     
 
  0.437
Bra030522
AT1G03160 (E=0.0) FZL | FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase (909 aa)
     
   
  0.430
Bra038675
AT3G11710 (E=3e-290) ATKRS-1 | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding (618 aa)
           
  0.406
Bra027496
AT5G43430 (E=5e-063) ETFBETA | ETFBETA; electron carrier (387 aa)
           
  0.406
Bra020757
AT3G06340 (E=8e-093) | DNAJ heat shock N-terminal domain-containing protein (653 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]