STRINGSTRING
Bra007491 protein (Brassica rapa) - STRING interaction network
"Bra007491" - AT3G59900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007491AT3G59900 (E=4e-018) ARGOS | ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) (106 aa)    
Predicted Functional Partners:
Bra017852
AT4G37750 (E=4e-222) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (556 aa)
           
  0.526
Bra011782
AT4G37750 (E=1e-237) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (545 aa)
           
  0.526
Bra010610
AT4G37750 (E=7e-210) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (553 aa)
           
  0.526
ARF2-2
AT5G62000 (E=0.0) ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (851 aa)
           
  0.489
Bra040450
AT3G63530 (E=5e-126) BB, BB2 | BB (BIG BROTHER); protein binding / ubiquitin-protein ligase/ zinc ion binding (242 aa)
           
  0.478
ARF2-3
AT5G62000 (E=0.0) ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (888 aa)
           
  0.476
Bra040720
AT1G13710 (E=3e-267) CYP78A5 | CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (516 aa)
           
  0.456
Bra026892
AT1G13710 (E=2e-266) CYP78A5 | CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (515 aa)
           
  0.456
Bra016947
AT2G41230 (E=3e-009) | unknown protein (88 aa)
     
   
  0.432
Bra011501
AT4G34160 (E=2e-149) CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator/ protein binding (373 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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