STRINGSTRING
Bra007493 protein (Brassica rapa) - STRING interaction network
"Bra007493" - AT3G59920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007493AT3G59920 (E=1e-239) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (445 aa)    
Predicted Functional Partners:
Bra038535
AT2G22290 (E=2e-093) ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6 | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (207 aa)
     
 
  0.941
Bra037802
AT5G64990 (E=3e-080) AtRABH1a | AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding (197 aa)
     
 
  0.941
Bra037641
AT2G44610 (E=2e-101) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.941
Bra017875
AT4G39890 (E=4e-096) AtRABH1c | AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding (258 aa)
     
 
  0.941
80A08_22
AT5G10260 (E=3e-100) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (206 aa)
     
 
  0.941
Bra006054
AT5G10260 (E=7e-106) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (207 aa)
     
 
  0.941
Bra004850
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.941
Bra000355
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.941
Bra038265
AT3G46060 (E=2e-090) ARA3 | ATRAB8A; GTP binding (376 aa)
     
 
  0.938
Bra039807
AT3G53610 (E=2e-097) ATRAB8 | ATRAB8; GTP binding (215 aa)
       
 
  0.937
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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