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Bra007494 protein (Brassica rapa) - STRING interaction network
"Bra007494" - AT3G59940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007494AT3G59940 (E=1e-165) | kelch repeat-containing F-box family protein (420 aa)    
Predicted Functional Partners:
Bra022183
AT3G16857 (E=3e-258) ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (681 aa)
       
      0.829
Bra012743
AT4G16110 (E=6e-132) ARR2 | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator (592 aa)
       
      0.612
Bra024596
AT1G23390 (E=4e-156) | kelch repeat-containing F-box family protein (383 aa)
     
   
  0.568
Bra030322
AT5G04230 (E=0.0) PAL3, ATPAL3 | PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase (698 aa)
       
      0.522
Bra029831
AT3G10340 (E=0.0) PAL4 | PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic (706 aa)
       
      0.522
Bra027457
AT5G42800 (E=3e-194) DFR, TT3, M318 | DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase (385 aa)
       
      0.522
Bra009358
AT5G08640 (E=1e-174) FLS | FLS (FLAVONOL SYNTHASE); flavonol synthase (336 aa)
       
      0.522
Bra003720
AT1G76410 (E=2e-061) ATL8 | ATL8; protein binding / zinc ion binding (185 aa)
         
  0.503
Bra019350
AT4G22880 (E=2e-182) LDOX, TDS4, TT18, ANS | LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (357 aa)
       
      0.487
Bra013652
AT4G22880 (E=3e-184) LDOX, TDS4, TT18, ANS | LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (358 aa)
       
      0.487
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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