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Bra007498 protein (Brassica rapa) - STRING interaction network
"Bra007498" - AT3G59980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007498AT3G59980 (E=6e-107) | tRNA-binding region domain-containing protein (270 aa)    
Predicted Functional Partners:
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
  0.997
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
  0.997
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
0.996
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
0.996
Bra014749
AT3G55400 (E=4e-277) OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding (593 aa)
   
  0.986
Bra007159
AT3G55400 (E=2e-293) OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding (610 aa)
   
  0.986
Bra003323
AT2G46450 (E=5e-181) ATCNGC12, CNGC12 | ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel (666 aa)
   
  0.979
Bra031214
AT4G39280 (E=2e-246) | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (487 aa)
   
  0.974
Bra030281
AT4G39280 (E=2e-227) | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (490 aa)
   
  0.974
Bra024759
AT1G25350 (E=2e-197) OVA9 | OVA9 (ovule abortion 9); glutamine-tRNA ligase (727 aa)
   
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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