STRINGSTRING
Bra007505 protein (Brassica rapa) - STRING interaction network
"Bra007505" - AT3G60090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007505AT3G60090 (E=4e-054) | VQ motif-containing protein (154 aa)    
Predicted Functional Partners:
Bra039937
AT2G22880 (E=7e-024) | VQ motif-containing protein (138 aa)
           
  0.489
Bra024996
AT5G46780 (E=4e-064) | VQ motif-containing protein (228 aa)
           
  0.489
Bra024362
AT5G65170 (E=3e-098) | VQ motif-containing protein (363 aa)
           
  0.489
Bra022675
AT5G53830 (E=8e-091) | VQ motif-containing protein (241 aa)
           
  0.489
Bra022063
AT5G46780 (E=4e-059) | VQ motif-containing protein (230 aa)
           
  0.489
Bra010666
AT4G39720 (E=5e-090) | VQ motif-containing protein (295 aa)
           
  0.489
Bra005995
AT5G08480 (E=8e-062) | VQ motif-containing protein (174 aa)
           
  0.489
Bra037806
AT5G65170 (E=2e-104) | VQ motif-containing protein (319 aa)
           
  0.479
Bra031876
AT5G65170 (E=7e-044) | VQ motif-containing protein (325 aa)
           
  0.479
Bra011838
AT4G39720 (E=1e-090) | VQ motif-containing protein (290 aa)
           
  0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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