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Bra007522 protein (Brassica rapa) - STRING interaction network
"Bra007522" - AT3G60280 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007522AT3G60280 (E=2e-040) UCC3 | UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (241 aa)    
Predicted Functional Partners:
Bra036357
AT3G25910 (E=3e-043) | zinc ion binding (491 aa)
           
  0.468
Bra025173
AT3G25910 (E=6e-047) | zinc ion binding (318 aa)
           
  0.468
Bra017851
AT4G37740 (E=2e-117) AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2); transcription activator (447 aa)
           
  0.468
Bra000575
AT2G22840 (E=6e-226) AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR 1); transcription activator (518 aa)
           
  0.468
Bra025816
AT1G20380 (E=0.0) | prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative (731 aa)
           
  0.459
Bra015783
AT1G76140 (E=0.0) | serine-type endopeptidase/ serine-type peptidase (807 aa)
           
  0.459
Bra008240
AT1G76140 (E=0.0) | serine-type endopeptidase/ serine-type peptidase (728 aa)
           
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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