STRINGSTRING
Bra007528 protein (Brassica rapa) - STRING interaction network
"Bra007528" - AT3G60360 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007528AT3G60360 (E=1e-098) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) ; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)    
Predicted Functional Partners:
Bra037166
AT5G66540 (E=2e-178) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). ; Involved in nucleolar processing of pre-1 [...] (526 aa)
     
  0.993
Bra025791
AT5G66540 (E=3e-018) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). (129 aa)
     
  0.992
Bra012079
AT5G66530 (E=1e-056) | aldose 1-epimerase family protein (489 aa)
     
  0.992
Bra028767
AT5G05210 (E=8e-088) | nucleolar matrix protein-related (340 aa)
     
 
  0.990
Bra005849
AT5G05210 (E=3e-086) | nucleolar matrix protein-related (344 aa)
     
 
  0.990
Bra027789
AT1G63780 (E=8e-145) IMP4 | IMP4 (294 aa)
     
 
  0.988
Bra036325
AT4G01560 (E=4e-159) MEE49 | MEE49 (maternal effect embryo arrest 49) (350 aa)
     
 
  0.986
Bra026962
AT1G12650 (E=1e-045) | unknown protein (232 aa)
     
 
    0.984
Bra028325
AT3G23620 (E=5e-130) | brix domain-containing protein (316 aa)
     
 
  0.982
Bra014967
AT3G23620 (E=5e-129) | brix domain-containing protein (315 aa)
     
 
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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