STRINGSTRING
Bra007530 protein (Brassica rapa) - STRING interaction network
"Bra007530" - AT3G60390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007530AT3G60390 (E=3e-097) HAT3 | HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor (311 aa)    
Predicted Functional Partners:
Bra024948
AT5G47370 (E=1e-106) HAT2 | HAT2; DNA binding / transcription factor/ transcription repressor (276 aa)
       
 
0.911
Bra011786
AT4G37790 (E=1e-116) HAT22 | HAT22; transcription factor (282 aa)
       
 
0.909
Bra009219
AT5G06710 (E=2e-127) HAT14 | HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor (340 aa)
       
 
0.906
Bra005907
AT5G06710 (E=5e-095) HAT14 | HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor (322 aa)
       
 
0.906
Bra040094
AT4G16780 (E=3e-124) ATHB-2, HAT4, ATHB2 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (285 aa)
       
 
0.900
Bra030200
AT2G22800 (E=7e-092) HAT9 | HAT9; DNA binding / transcription factor (281 aa)
       
   
0.614
Bra017853
AT4G37790 (E=1e-120) HAT22 | HAT22; transcription factor (281 aa)
       
   
0.614
Bra038707
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1019 aa)
       
 
  0.522
Bra034764
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1016 aa)
       
 
  0.522
Bra017053
AT2G39760 (E=1e-188) ATBPM3, BPM3 | BPM3; protein binding (399 aa)
       
      0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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