STRINGSTRING
Bra007549 protein (Brassica rapa) - STRING interaction network
"Bra007549" - AT3G60660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007549AT3G60660 (E=1e-092) | unknown protein (337 aa)    
Predicted Functional Partners:
Bra007084
AT3G54630 (E=6e-198) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Kinetochore protein Ndc80 (InterPro-IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species- Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source- NCBI BLink). (574 aa)
     
  0.895
Bra009117
AT5G05510 (E=1e-091) | protein kinase-related (453 aa)
     
 
    0.697
Bra005485
AT2G33560 (E=2e-163) | spindle checkpoint protein-related (374 aa)
     
 
    0.697
Bra037054
AT4G33270 (E=2e-024) CDC20.1 | CDC20.1; signal transducer (63 aa)
     
 
    0.672
Bra037011
AT4G33270 (E=4e-199) CDC20.1 | CDC20.1; signal transducer (419 aa)
     
 
    0.672
Bra034555
AT4G33270 (E=7e-101) CDC20.1 | CDC20.1; signal transducer (379 aa)
     
 
    0.672
Bra011430
AT4G33270 (E=1e-249) CDC20.1 | CDC20.1; signal transducer (715 aa)
     
 
    0.672
Bra008327
AT4G33260 (E=3e-153) CDC20.2 | CDC20.2; signal transducer (428 aa)
     
 
    0.672
Bra005544
AT4G33260 (E=9e-181) CDC20.2 | CDC20.2; signal transducer (439 aa)
     
 
    0.672
Bra031135
AT2G20635 (E=6e-112) | ATP binding / protein kinase/ protein serine/threonine kinase (475 aa)
     
 
    0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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