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Bra007554 protein (Brassica rapa) - STRING interaction network
"Bra007554" - AT3G60730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007554AT3G60730 (E=5e-260) | pectinesterase family protein (521 aa)    
Predicted Functional Partners:
Bra030510
AT1G02790 (E=1e-201) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
       
  0.765
Bra010873
AT1G02790 (E=2e-197) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (421 aa)
       
  0.765
Bra010872
AT1G02790 (E=8e-200) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
       
  0.765
Bra040034
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.743
Bra040034.1-P
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.743
Bra035034
AT1G78400 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (400 aa)
       
  0.743
Bra022928
AT2G33160 (E=2e-189) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (407 aa)
       
  0.743
Bra001269
AT3G07840 (E=5e-193) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.743
Bra001268
AT3G07820 (E=4e-208) | polygalacturonase 3 (PGA3) / pectinase (395 aa)
       
  0.743
Bra037676
AT2G43890 (E=1e-208) | polygalacturonase, putative / pectinase, putative (394 aa)
       
  0.736
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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