STRINGSTRING
Bra007557 protein (Brassica rapa) - STRING interaction network
"Bra007557" - AT3G60780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007557AT3G60780 (E=3e-102) | unknown protein (219 aa)    
Predicted Functional Partners:
Bra009332
AT5G08240 (E=6e-087) | unknown protein (261 aa)
           
  0.541
Bra029360
AT5G23160 (E=5e-068) | unknown protein (252 aa)
           
  0.511
Bra025657
AT5G39650 (E=6e-108) | unknown protein (244 aa)
           
  0.510
Bra009594
AT5G02390 (E=2e-280) | unknown protein (807 aa)
           
  0.475
Bra022658
AT5G53520 (E=0.0) ATOPT8, OPT8 | ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8); oligopeptide transporter (740 aa)
           
  0.474
Bra004325
AT1G68610 (E=1e-072) | unknown protein (163 aa)
           
  0.449
Bra005721
AT5G02390 (E=7e-145) | unknown protein (778 aa)
           
  0.445
Bra005978
AT5G08240 (E=1e-066) | unknown protein (223 aa)
           
  0.428
Bra006030
AT5G39650 (E=2e-094) | unknown protein (189 aa)
           
  0.424
Bra025049
AT5G45840 (E=1e-265) | leucine-rich repeat transmembrane protein kinase, putative (645 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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