STRINGSTRING
Bra007564 protein (Brassica rapa) - STRING interaction network
"Bra007564" - AT3G60810 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007564AT3G60810 (E=1e-105) | unknown protein (215 aa)    
Predicted Functional Partners:
Bra011635
AT4G35760 (E=4e-144) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vitamin K epoxide reductase (InterPro-IPR012932), Thioredoxin-like fold (InterPro-IPR012336); Has 447 Blast hits to 447 proteins in 86 species- Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink). (358 aa)
   
          0.432
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
   
          0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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