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Bra007566 protein (Brassica rapa) - STRING interaction network
"Bra007566" - AT3G60830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007566AT3G60830 (E=3e-114) ATARP7, ARP7 | ATARP7 (ACTIN-RELATED PROTEIN 7); structural constituent of cytoskeleton (328 aa)    
Predicted Functional Partners:
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
     
  0.967
Bra024373
AT4G01710 (E=9e-068) CRK, ARPC5 | CRK (CROOKED); actin binding ; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (135 aa)
       
  0.955
Bra038010
AT1G55650 (E=2e-071) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (324 aa)
       
  0.945
Bra034683
AT3G13350 (E=1e-054) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (300 aa)
       
  0.945
Bra032491
AT1G04880 (E=9e-165) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (440 aa)
       
  0.945
Bra030594
AT1G04880 (E=6e-131) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (409 aa)
       
  0.945
Bra015787
AT1G76110 (E=5e-152) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (339 aa)
       
  0.945
Bra015358
AT1G04880 (E=2e-150) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (417 aa)
       
  0.945
Bra016116
AT1G71790 (E=6e-138) | F-actin capping protein beta subunit family protein (256 aa)
     
 
  0.938
Bra038441
AT4G14145 (E=1e-046) | unknown protein (126 aa)
       
  0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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