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Bra007578 protein (Brassica rapa) - STRING interaction network
"Bra007578" - AT3G61170 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007578AT3G61170 (E=3e-225) | pentatricopeptide (PPR) repeat-containing protein (803 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.923
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.923
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
 
    0.923
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
 
    0.923
Bra016585
AT1G17830 (E=3e-132) | unknown protein (331 aa)
           
  0.604
Bra007795
AT2G25520 (E=4e-170) | phosphate translocator-related (349 aa)
           
  0.582
Bra034207
AT4G03420 (E=1e-140) | unknown protein (313 aa)
           
  0.570
Bra033413
AT1G03610 (E=5e-143) | unknown protein (305 aa)
           
  0.570
Bra030538
AT1G03610 (E=2e-155) | unknown protein (304 aa)
           
  0.570
Bra025945
AT1G17830 (E=2e-141) | unknown protein (329 aa)
           
  0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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