STRINGSTRING
Bra007595 protein (Brassica rapa) - STRING interaction network
"Bra007595" - AT3G61310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007595AT3G61310 (E=8e-117) | DNA-binding family protein (341 aa)    
Predicted Functional Partners:
Bra021027
AT4G17950 (E=4e-090) | DNA-binding family protein (410 aa)
       
   
0.897
Bra019359
AT4G22770 (E=1e-135) | DNA-binding family protein (329 aa)
       
   
0.890
Bra035899
AT5G62260 (E=1e-112) | DNA binding (392 aa)
       
   
0.612
Bra033121
AT4G12080 (E=1e-088) | DNA-binding family protein (310 aa)
       
   
0.612
Bra029271
AT5G62260 (E=7e-110) | DNA binding (401 aa)
       
   
0.612
Bra010070
AT5G62260 (E=5e-116) | DNA binding (403 aa)
       
   
0.612
Bra039309
AT2G45850 (E=1e-118) | DNA-binding family protein (341 aa)
       
   
0.514
Bra037321
AT4G00200 (E=5e-087) | DNA binding (316 aa)
       
   
0.511
Bra017536
AT5G46640 (E=3e-092) | DNA-binding family protein (353 aa)
       
   
0.453
Bra013270
AT4G17950 (E=2e-094) | DNA-binding family protein (426 aa)
       
   
0.453
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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