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Bra007605 protein (Brassica rapa) - STRING interaction network
"Bra007605" - AT3G61450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007605AT3G61450 (E=2e-061) SYP73, ATSYP73 | SYP73 (SYNTAXIN OF PLANTS 73); protein transporter (252 aa)    
Predicted Functional Partners:
Bra030733
AT1G08560 (E=9e-128) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (304 aa)
       
 
  0.627
Bra018615
AT1G08560 (E=7e-130) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (307 aa)
       
 
  0.627
Bra023003
AT2G35190 (E=8e-130) NPSN11, ATNPSN11, NSPN11 | NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter (262 aa)
       
 
  0.534
Bra017331
AT2G35190 (E=2e-122) NPSN11, ATNPSN11, NSPN11 | NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter (262 aa)
       
 
  0.534
Bra040323
AT2G45140 (E=4e-108) PVA12 | PVA12 (PLANT VAP HOMOLOG 12); structural molecule (239 aa)
     
      0.523
Bra014481
AT3G60600 (E=1e-103) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (239 aa)
     
      0.523
Bra007547
AT3G60600 (E=3e-107) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (238 aa)
     
      0.523
Bra003423
AT3G60600 (E=2e-108) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (240 aa)
     
      0.523
Bra005361
AT2G35190 (E=3e-127) NPSN11, ATNPSN11, NSPN11 | NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter (264 aa)
       
 
  0.440
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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