STRINGSTRING
Bra007608 protein (Brassica rapa) - STRING interaction network
"Bra007608" - AT5G28350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007608AT5G28350 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1339 (InterPro-IPR009771), WD40 repeat (InterPro-IPR001680), WD40/YVTN repeat-like (InterPro-IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro-IPR011044); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G61480.1); Has 271 Blast hits to 226 proteins in 106 species- Archae - 0; Bacteria - 9; Metazoa - 133; Fungi - 64; Plants - 30; Viruses - 0; Other Eukaryot [...] (1114 aa)    
Predicted Functional Partners:
Bra038535
AT2G22290 (E=2e-093) ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6 | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (207 aa)
       
  0.966
Bra037802
AT5G64990 (E=3e-080) AtRABH1a | AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding (197 aa)
       
  0.966
Bra037641
AT2G44610 (E=2e-101) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
       
  0.966
Bra017875
AT4G39890 (E=4e-096) AtRABH1c | AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding (258 aa)
       
  0.966
80A08_22
AT5G10260 (E=3e-100) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (206 aa)
       
  0.966
Bra006054
AT5G10260 (E=7e-106) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (207 aa)
       
  0.966
Bra004850
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
       
  0.966
Bra000355
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
       
  0.966
Bra024598
AT1G23410 (E=2e-021) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (210 aa)
       
      0.904
Bra016346
AT1G23410 (E=6e-029) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (84 aa)
       
      0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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