STRINGSTRING
Bra007609 protein (Brassica rapa) - STRING interaction network
"Bra007609" - AT3G61490 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007609AT3G61490 (E=1e-251) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (470 aa)    
Predicted Functional Partners:
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
   
 
  0.576
Bra040320
AT2G45220 (E=1e-264) | pectinesterase family protein (510 aa)
   
 
  0.576
Bra036280
AT4G02300 (E=2e-193) | pectinesterase family protein (522 aa)
   
 
  0.576
Bra036279
AT4G02320 (E=2e-214) | pectinesterase family protein (516 aa)
   
 
  0.576
Bra027350
AT3G14310 (E=5e-294) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (592 aa)
   
 
  0.576
Bra022648
AT5G53370 (E=3e-273) ATPMEPCRF, PMEPCRF | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase (586 aa)
   
 
  0.576
Bra021549
AT3G14310 (E=2e-283) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (592 aa)
   
 
  0.576
Bra021548
AT3G14310 (E=2e-274) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (592 aa)
   
 
  0.576
Bra003062
AT5G53370 (E=2e-220) ATPMEPCRF, PMEPCRF | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase (456 aa)
   
 
  0.576
Bra001547
AT3G14310 (E=1e-291) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (591 aa)
   
 
  0.576
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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