STRINGSTRING
Bra007615 protein (Brassica rapa) - STRING interaction network
"Bra007615" - AT3G61580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007615AT3G61580 (E=2e-242) | delta-8 sphingolipid desaturase (SLD1) (447 aa)    
Predicted Functional Partners:
Bra034777
AT3G12120 (E=2e-215) FAD2 | FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase (384 aa)
   
   
  0.519
Bra032439
AT1G06080 (E=4e-176) ADS1 | ADS1 (DELTA 9 DESATURASE 1); oxidoreductase (303 aa)
     
   
  0.489
Bra032438
AT1G06090 (E=9e-163) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra032437
AT1G06090 (E=7e-159) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra030650
AT1G06360 (E=4e-137) | fatty acid desaturase family protein (299 aa)
     
   
  0.489
Bra030649
AT1G06360 (E=1e-136) | fatty acid desaturase family protein (301 aa)
     
   
  0.489
Bra030638
AT1G06090 (E=4e-155) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra027203
AT3G15850 (E=1e-181) FAD5, FADB, JB67, ADS3 | FAD5 (FATTY ACID DESATURASE 5); 16-0 monogalactosyldiacylglycerol desaturase/ oxidoreductase (374 aa)
     
   
  0.489
Bra027201
AT3G15870 (E=1e-095) | oxidoreductase (244 aa)
     
   
  0.489
Bra027096
AT3G15870 (E=7e-149) | oxidoreductase (354 aa)
     
   
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]