STRINGSTRING
Bra007616 protein (Brassica rapa) - STRING interaction network
"Bra007616" - AT3G61590 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007616AT3G61590 (E=6e-184) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase (404 aa)    
Predicted Functional Partners:
Bra026575
AT2G02870 (E=6e-196) | kelch repeat-containing F-box family protein (444 aa)
           
  0.465
Bra027367
AT3G14172 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- COP1-interacting protein-related (TAIR-AT1G72410.1); Has 2665 Blast hits to 1956 proteins in 215 species- Archae - 2; Bacteria - 189; Metazoa - 878; Fungi - 141; Plants - 132; Viruses - 5; Other Eukaryotes - 1318 (source- NCBI BLink). (1151 aa)
           
  0.465
Bra025979
AT1G17360 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- COP1-interacting protein-related (TAIR-AT1G72410.1); Has 8834 Blast hits to 6495 proteins in 406 species- Archae - 8; Bacteria - 626; Metazoa - 3389; Fungi - 793; Plants - 257; Viruses - 52; Other Eukaryotes - 3709 (source- NCBI BLink). (1012 aa)
           
  0.465
Bra001537
AT3G14172 (E=5e-233) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- COP1-interacting protein-related (TAIR-AT1G72410.1); Has 2665 Blast hits to 1956 proteins in 215 species- Archae - 2; Bacteria - 189; Metazoa - 878; Fungi - 141; Plants - 132; Viruses - 5; Other Eukaryotes - 1318 (source- NCBI BLink). (1157 aa)
           
  0.465
Bra016938
AT2G41370 (E=6e-228) BOP2 | BOP2 (BLADE ON PETIOLE2); protein binding (487 aa)
           
  0.412
Bra007306
AT3G57130 (E=3e-216) BOP1 | BOP1 (BLADE ON PETIOLE 1); protein binding (462 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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