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Bra007627 protein (Brassica rapa) - STRING interaction network
"Bra007627" - AT3G61690 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007627AT3G61690 (E=0.0) | unknown protein (1645 aa)    
Predicted Functional Partners:
Bra036515
AT5G24440 (E=4e-106) CID13 | CID13 (CTC-Interacting Domain 13); RNA binding / nucleic acid binding / nucleotide binding (329 aa)
           
  0.542
Bra036513
AT5G24440 (E=7e-103) CID13 | CID13 (CTC-Interacting Domain 13); RNA binding / nucleic acid binding / nucleotide binding (327 aa)
           
  0.542
Bra031600
AT1G07910 (E=0.0) ATRNL, RNL | RNL (RNA LIGASE); 2’,3’-cyclic-nucleotide 3’-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase (1118 aa)
     
   
  0.524
Bra018674
AT1G07910 (E=0.0) ATRNL, RNL | RNL (RNA LIGASE); 2’,3’-cyclic-nucleotide 3’-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase (1064 aa)
     
   
  0.524
Bra022488
AT1G65220 (E=6e-205) | eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (403 aa)
           
  0.506
Bra040191
AT3G04480 (E=0.0) | endoribonuclease (712 aa)
           
  0.485
Bra001106
AT3G04480 (E=0.0) | endoribonuclease (719 aa)
           
  0.485
Bra039496
AT5G36230 (E=2e-222) | eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (411 aa)
           
  0.473
Bra024708
AT1G26570 (E=1e-259) UGD1, ATUGD1 | UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding / catalytic/ coenzyme binding / oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (481 aa)
           
  0.448
Bra039325
AT2G45620 (E=1e-258) | nucleotidyltransferase family protein (760 aa)
           
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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