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Bra007631 protein (Brassica rapa) - STRING interaction network
"Bra007631" - AT3G61770 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007631AT3G61770 (E=1e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro-IPR003832); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G67600.1); Has 613 Blast hits to 613 proteins in 199 species- Archae - 0; Bacteria - 356; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 153 (source- NCBI BLink). (265 aa)    
Predicted Functional Partners:
Bra037823
AT5G65660 (E=1e-048) | hydroxyproline-rich glycoprotein family protein (141 aa)
           
  0.573
Bra026874
AT1G13900 (E=0.0) | calcineurin-like phosphoesterase family protein (652 aa)
           
  0.495
Bra026550
AT2G03450 (E=0.0) PAP9, ATPAP9 | PAP9 (PURPLE ACID PHOSPHATASE 9); acid phosphatase/ protein serine/threonine phosphatase (642 aa)
           
  0.495
Bra016721
AT1G13900 (E=0.0) | calcineurin-like phosphoesterase family protein (651 aa)
           
  0.495
Bra031851
AT5G65660 (E=4e-050) | hydroxyproline-rich glycoprotein family protein (138 aa)
           
  0.483
Bra024405
AT5G65660 (E=1e-044) | hydroxyproline-rich glycoprotein family protein (130 aa)
           
  0.483
Bra020820
AT4G23260 (E=2e-250) | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (677 aa)
           
  0.449
Bra037947
AT5G49940 (E=1e-085) NFU2, ATCNFU2 | NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (249 aa)
         
  0.443
Bra031245
AT3G20970 (E=2e-110) NFU4, ATNFU2 | NFU4; structural molecule (280 aa)
         
  0.443
Bra018906
AT1G51390 (E=4e-104) NFU5, ATNFU1 | NFU5; ATP binding / structural molecule (275 aa)
         
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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