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Bra007634 protein (Brassica rapa) - STRING interaction network
"Bra007634" - AT3G61870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007634AT3G61870 (E=3e-087) | unknown protein (274 aa)    
Predicted Functional Partners:
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
   
        0.562
Bra028418
AT5G38660 (E=2e-113) APE1 | APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (288 aa)
   
        0.549
Bra022262
AT3G17930 (E=2e-062) | unknown protein (188 aa)
   
        0.542
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
   
        0.539
Bra032943
AT3G26710 (E=1e-124) CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) (264 aa)
   
        0.536
Bra025610
AT2G04700 (E=2e-076) | ferredoxin thioredoxin reductase catalytic beta chain family protein ; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin (143 aa)
   
        0.531
Bra025224
AT3G26710 (E=4e-119) CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) (265 aa)
   
        0.530
Bra024187
AT4G28640 (E=2e-087) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (398 aa)
   
        0.524
Bra011047
AT4G28660 (E=4e-086) PSB28 | PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) (215 aa)
   
        0.523
Bra039530
AT5G45040 (E=9e-077) | cytochrome c6 (ATC6) (174 aa)
   
          0.513
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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