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Bra007638 protein (Brassica rapa) - STRING interaction network
"Bra007638" - AT5G63200 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007638AT5G63200 (E=6e-019) | tetratricopeptide repeat (TPR)-containing protein (57 aa)    
Predicted Functional Partners:
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
  0.948
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
  0.945
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
  0.945
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
  0.937
Bra009582
AT1G79730 (E=7e-208) ELF7 | ELF7 (EARLY FLOWERING 7) (576 aa)
     
  0.936
Bra035062
AT1G78770 (E=2e-291) APC6 | cell division cycle family protein (544 aa)
       
  0.936
Bra040834
AT3G22590 (E=1e-202) | RNA pol II accessory factor Cdc73 family protein (411 aa)
     
  0.936
Bra013534
AT4G21530 (E=0.0) | nucleotide binding (773 aa)
     
  0.935
Bra028755
AT5G05560 (E=0.0) EMB2771 | EMB2771 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase (1727 aa)
       
  0.932
Bra005857
AT5G05560 (E=0.0) EMB2771 | EMB2771 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase (1767 aa)
       
  0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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