STRINGSTRING
Bra007640 protein (Brassica rapa) - STRING interaction network
"Bra007640" - AT3G61910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007640AT3G61910 (E=6e-146) NST2, ANAC066 | ANAC066 (ARABIDOPSIS NAC DOMAIN PROTEIN 66); transcription activator/ transcription factor (322 aa)    
Predicted Functional Partners:
Bra021515
AT3G13890 (E=1e-138) MYB26 | ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor (356 aa)
           
  0.530
Bra008875
AT5G12870 (E=8e-123) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor (280 aa)
           
  0.510
Bra006166
AT5G12870 (E=5e-120) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor (280 aa)
           
  0.510
Bra029696
AT3G08500 (E=1e-137) MYB83, AtMYB83 | MYB83 (myb domain protein 83); DNA binding / transcription factor (333 aa)
           
  0.499
Bra001284
AT3G08500 (E=2e-152) MYB83, AtMYB83 | MYB83 (myb domain protein 83); DNA binding / transcription factor (340 aa)
           
  0.499
Bra020837
AT4G22680 (E=4e-124) MYB85, AtMYB85 | MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor (268 aa)
           
  0.482
Bra019368
AT4G22680 (E=3e-112) MYB85, AtMYB85 | MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor (269 aa)
           
  0.482
Bra013633
AT4G22680 (E=8e-128) MYB85, AtMYB85 | MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor (267 aa)
           
  0.482
Bra035097
AT1G79180 (E=4e-097) ATMYB63, MYB63 | MYB63 (MYB DOMAIN PROTEIN 63); DNA binding / transcription activator/ transcription factor (270 aa)
           
  0.479
Bra026720
AT1G16490 (E=4e-114) ATMYB58, MYB58 | MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor (279 aa)
           
  0.474
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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