STRINGSTRING
Bra007642 protein (Brassica rapa) - STRING interaction network
"Bra007642" - AT3G61930 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007642AT3G61930 (E=2e-027) | unknown protein (110 aa)    
Predicted Functional Partners:
Bra025567
AT5G40510 (E=1e-163) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Sucraseferredoxin-like (InterPro-IPR009737), Thioredoxin-like fold (InterPro-IPR012336); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27570.1); Has 291 Blast hits to 291 proteins in 101 species- Archae - 6; Bacteria - 54; Metazoa - 0; Fungi - 160; Plants - 40; Viruses - 0; Other Euka [...] (330 aa)
           
  0.455
Bra039352
AT3G12900 (E=6e-179) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (357 aa)
           
  0.406
Bra034720
AT3G12900 (E=5e-179) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (365 aa)
           
  0.406
Bra019736
AT1G12030 (E=1e-107) | unknown protein (293 aa)
           
  0.406
Bra016797
AT1G12030 (E=9e-112) | unknown protein (295 aa)
           
  0.406
Bra014588
AT3G58060 (E=1e-198) | cation efflux family protein / metal tolerance protein, putative (MTPc3) (405 aa)
           
  0.406
Bra007377
AT3G58060 (E=2e-200) | cation efflux family protein / metal tolerance protein, putative (MTPc3) (410 aa)
           
  0.406
Bra003316
AT3G58060 (E=6e-194) | cation efflux family protein / metal tolerance protein, putative (MTPc3) (410 aa)
           
  0.406
Bra001476
AT3G12900 (E=1e-183) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (357 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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