STRINGSTRING
Bra007659 protein (Brassica rapa) - STRING interaction network
"Bra007659" - AT3G62080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007659AT3G62080 (E=2e-188) | SNF7 family protein (423 aa)    
Predicted Functional Partners:
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
     
  0.913
Bra024160
AT4G29160 (E=7e-067) SNF7.1 | SNF7.1 (213 aa)
     
  0.913
Bra011085
AT4G29160 (E=3e-066) SNF7.1 | SNF7.1 (212 aa)
     
  0.913
Bra013368
AT4G19003 (E=4e-097) VPS25 | VPS25 (179 aa)
         
  0.709
Bra026406
AT4G26750 (E=1e-145) | hydroxyproline-rich glycoprotein family protein (419 aa)
         
  0.702
Bra022056
AT3G10640 (E=3e-025) VPS60.1 | VPS60.1 (85 aa)
     
 
  0.676
Bra009422
AT5G04850 (E=6e-110) VPS60.2 | VPS60.2 (240 aa)
     
 
  0.676
Bra005823
AT5G04850 (E=1e-110) VPS60.2 | VPS60.2 (238 aa)
     
 
  0.676
Bra001371
AT3G10640 (E=7e-106) VPS60.1 | VPS60.1 (234 aa)
     
 
  0.676
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
       
      0.619
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]